Genetic Analysis Resources

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Note: Page is still under construction

Databases
SNPs
The HapMap Project
dbSNP (NCBI)
HGVbase
Additional links
Mutations
HGVS, variation databases and related
Locus Specific Mutation Databases
HGMD, the Human Gene Mutation Database

 

Software
General
Jurg Ott's List of Genetic Analysis Software
SNP selection
The HapMap Project
SNPbrowser Software (Applied Biosystems)
TAMAL, select SNPs in a specified set of candidate genes for genotyping
Tagger, selection and evaluation of tag SNPs
TagSNPs (D. Stram)
SNPs3D
HaploView
Haplotype reconstruction
PHASE
Preprocessing of SNP arrays
BRLMM, genotype calling algorithm for Affymetrix genotyping arrays.
Linkage analysis on the PC
easyLINKAGE
dChip . SNP data in dChip. dChipLinkage. CompareLinkage. User forum.
Linkage analysis on the web
SuperLink Online
Copy Number Analysis
CNAG (Tokyo University)
SNPscan (Pevsner Lab)
Commercial Software
HelixTree (GoldenHelix)

 

Education
Teaching Statistics Web Pages

 

Vered Caspi, Bioinformatics Core Facility, Ben-Gurion University of the Negev. Tel: 08-6479034